Spatial Transcriptomics Data Atlas

Published spatial transcriptomics studies, organised by tissue, platform and species, with links to the data the authors deposited.

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Built by Kilian Maire. Studies were found in Europe PMC full text and NCBI GEO, then each paper was read by a language-model agent. The agent recorded the tissue, platform and samples, and checked the file lists in GEO, Zenodo and other repositories for deposited spatial data.

Verify before use. Entries marked low confidence were filled from the abstract only. "Raw" means instrument-level spatial files were seen in the repository; "processed" means only matrices or objects (h5ad, RDS). Snapshot: . Annotations licensed CC BY 4.0, KIMA Holding.

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